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AlleleFlux Documentation
AlleleFlux Documentation

Getting Started

  • Overview
  • Installation
  • Quickstart

Usage Guide

  • Input Preparation
  • Running the Workflow
  • Visualization Guide
  • Interpreting Results
  • dN/dS Analysis Guide

Examples

  • Tutorial
  • Use Cases

Reference

  • CLI Reference
  • Configuration Reference
  • Input Files Reference
  • Output Files Reference
  • Statistical Tests Reference
  • FAQ & Troubleshooting
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